HL_4V4Y_117

3D structure

PDB id

4V4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex.

Experimental method

X-RAY DIFFRACTION

Resolution

5.5 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

4V4Y|1|BA|A|1095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Y_117 not in the Motif Atlas

Homologous match to HL_5J7L_212

Geometric discrepancy: 0.5444

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

4V4Y|1|BA|G|1091
4V4Y|1|BA|C|1092
4V4Y|1|BA|G|1093
4V4Y|1|BA|U|1094
4V4Y|1|BA|A|1095
4V4Y|1|BA|A|1096
4V4Y|1|BA|U|1097
4V4Y|1|BA|A|1098
4V4Y|1|BA|G|1099
4V4Y|1|BA|C|1100

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B8

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6

Chain BL

50S ribosomal protein L11