HL_4V4Z_032

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Z_032 not in the Motif Atlas

Homologous match to HL_5J7L_031

Geometric discrepancy: 0.1716

The information below is about HL_5J7L_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V4Z|1|AA|C|1515
4V4Z|1|AA|G|1516
4V4Z|1|AA|G|1517
4V4Z|1|AA|A|1518
4V4Z|1|AA|A|1519
4V4Z|1|AA|G|1520

Current chains

Chain AA

16S rRNA

Nearby chains

Chain BA

Large subunit ribosomal RNA; LSU rRNA