HL_4V4Z_052

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CCGUGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Z_052 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.3489

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4V4Z|1|BA|C|461
4V4Z|1|BA|C|462
4V4Z|1|BA|G|463
4V4Z|1|BA|U|464
4V4Z|1|BA|G|465
4V4Z|1|BA|A|466
4V4Z|1|BA|G|467
4V4Z|1|BA|G|468

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

50S RIBOSOMAL PROTEIN L34

Chain BF

50S RIBOSOMAL PROTEIN L4