HL_4V4Z_065

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GGCUUAGAAGCAGCC

Length

15 nucleotides

Bulged bases

4V4Z|1|BA|U|1066, 4V4Z|1|BA|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Z_065 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3194

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V4Z|1|BA|G|1062
4V4Z|1|BA|G|1063
4V4Z|1|BA|C|1064
4V4Z|1|BA|U|1065
4V4Z|1|BA|U|1066
4V4Z|1|BA|A|1067
4V4Z|1|BA|G|1068
4V4Z|1|BA|A|1069
4V4Z|1|BA|A|1070
4V4Z|1|BA|G|1071
4V4Z|1|BA|C|1072
4V4Z|1|BA|A|1073
4V4Z|1|BA|G|1074
4V4Z|1|BA|C|1075
4V4Z|1|BA|C|1076

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BL

50S RIBOSOMAL PROTEIN L11

Chain BP

50S RIBOSOMAL PROTEIN L16