HL_4V4Z_068

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CCCGCGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Z_068 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.3818

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V4Z|1|BA|C|1221
4V4Z|1|BA|C|1222
4V4Z|1|BA|C|1223
4V4Z|1|BA|G|1224
4V4Z|1|BA|C|1225
4V4Z|1|BA|G|1226
4V4Z|1|BA|A|1227
4V4Z|1|BA|G|1228

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BO

50S RIBOSOMAL PROTEIN L15

Chain BT

50S RIBOSOMAL PROTEIN L20

Chain BU

50S RIBOSOMAL PROTEIN L21