HL_4V4Z_071

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Z_071 not in the Motif Atlas

Geometric match to HL_4V88_222

Geometric discrepancy: 0.3706

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V4Z|1|BA|C|1363
4V4Z|1|BA|G|1364
4V4Z|1|BA|A|1365
4V4Z|1|BA|A|1366
4V4Z|1|BA|A|1367
4V4Z|1|BA|G|1368

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B3

50S RIBOSOMAL PROTEIN L31

Chain B6

50S RIBOSOMAL PROTEIN L34