HL_4V4Z_072

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

4V4Z|1|BA|U|1396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Z_072 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.314

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

4V4Z|1|BA|G|1389
4V4Z|1|BA|U|1390
4V4Z|1|BA|U|1391
4V4Z|1|BA|A|1392
4V4Z|1|BA|A|1393
4V4Z|1|BA|U|1394
4V4Z|1|BA|A|1395
4V4Z|1|BA|U|1396
4V4Z|1|BA|U|1397
4V4Z|1|BA|C|1398

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BW

50S RIBOSOMAL PROTEIN L23