HL_4V4Z_086

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V4Z|1|BA|A|2030, 4V4Z|1|BA|A|2031, 4V4Z|1|BA|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Z_086 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.3429

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

4V4Z|1|BA|G|2027
4V4Z|1|BA|U|2028
4V4Z|1|BA|G|2029
4V4Z|1|BA|A|2030
4V4Z|1|BA|A|2031
4V4Z|1|BA|G|2032
4V4Z|1|BA|A|2033
4V4Z|1|BA|U|2034
4V4Z|1|BA|G|2035
4V4Z|1|BA|C|2036

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

50S RIBOSOMAL PROTEIN L3

Chain BT

50S RIBOSOMAL PROTEIN L20