HL_4V4Z_090

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4V4Z|1|BA|A|2268, 4V4Z|1|BA|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Z_090 not in the Motif Atlas

Homologous match to HL_7A0S_053

Geometric discrepancy: 0.4597

The information below is about HL_7A0S_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

4V4Z|1|BA|C|2264
4V4Z|1|BA|U|2265
4V4Z|1|BA|A|2266
4V4Z|1|BA|A|2267
4V4Z|1|BA|A|2268
4V4Z|1|BA|A|2269
4V4Z|1|BA|G|2270
4V4Z|1|BA|G|2271
4V4Z|1|BA|U|2272
4V4Z|1|BA|A|2273
4V4Z|1|BA|A|2274
4V4Z|1|BA|C|2275
4V4Z|1|BA|G|2276

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BP

50S RIBOSOMAL PROTEIN L16

Chain BZ

50S RIBOSOMAL PROTEIN L27