HL_4V4Z_091

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GACGGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Z_091 not in the Motif Atlas

Homologous match to HL_7A0S_076

Geometric discrepancy: 0.5403

The information below is about HL_7A0S_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V4Z|1|BA|G|2304
4V4Z|1|BA|A|2305
4V4Z|1|BA|C|2306
4V4Z|1|BA|G|2307
4V4Z|1|BA|G|2308
4V4Z|1|BA|A|2309
4V4Z|1|BA|A|2310
4V4Z|1|BA|A|2311
4V4Z|1|BA|U|2312

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BG

50S RIBOSOMAL PROTEIN L5