HL_4V4Z_111

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

CCGCAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Z_111 not in the Motif Atlas

Geometric match to HL_2IL9_007

Geometric discrepancy: 0.3826

The information below is about HL_2IL9_007

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

4V4Z|1|BA|C|543
4V4Z|1|BA|C|544
4V4Z|1|BA|G|545
4V4Z|1|BA|C|546
4V4Z|1|BA|A|547
4V4Z|1|BA|A|548
4V4Z|1|BA|G|549
4V4Z|1|BA|G|550

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BU

50S RIBOSOMAL PROTEIN L21