HL_4V4Z_119

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GGUGAAAU

Length

8 nucleotides

Bulged bases

4V4Z|1|AA|U|692

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Z_119 not in the Motif Atlas

Geometric match to HL_9DFE_020

Geometric discrepancy: 0.3153

The information below is about HL_9DFE_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V4Z|1|AA|G|690
4V4Z|1|AA|G|691
4V4Z|1|AA|U|692
4V4Z|1|AA|G|693
4V4Z|1|AA|A|694
4V4Z|1|AA|A|695
4V4Z|1|AA|A|696
4V4Z|1|AA|U|697

Current chains

Chain AA

16S rRNA

Nearby chains

Chain A1

mRNA

Chain AD

Transfer RNA; tRNA

Chain AJ

30S ribosomal protein S7

Chain AN

30S ribosomal protein S11