Motif HL_98423.3 Version HL_98423.3 of this group appears in releases 4.2 to 4.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4KQY_003 | 4KQY | 0.3946 | 1 | GNRA wlth tandem sheared | A | SAM-I riboswitch | C | 94 | U | 95 | C | 96 | G | 97 | A | 98 | A | 99 | C | 100 | G | 102 | cWW | ||
| 2 | HL_5AOX_001 | 5AOX | 0.2840 | 0 | GNRA wlth tandem sheared | C | ALU JO CONSENSUS RNA | G | 11 | G | 12 | U | 13 | G | 14 | G | 15 | C | 16 | U | 17 | C | 18 | cWW | ntSH | |
| 3 | HL_4WF9_004 | 4WF9 | 0.3365 | 0 | GNRA wlth tandem sheared | X | LSU rRNA | A | 136 | G | 137 | U | 138 | U | 139 | A | 140 | U | 141 | G | 142 | U | 143 | cWW | ||
| 4 | HL_8P9A_140 | 8P9A | 0.1931 | 0 | GNRA wlth tandem sheared | AR | LSU rRNA | U | 1267 | G | 1268 | U | 1269 | A | 1270 | A | 1271 | C | 1272 | A | 1273 | A | 1274 | cWW | tSH | ntSHa |
| 5 | HL_1MMS_004 | 1MMS | 0.1590 | 0 | D | LSU rRNA | C | 1092 | G | 1093 | U | 1094 | A | 1095 | A | 1096 | C | 1097 | A | 1098 | G | 1099 | cWW | tSH | ntSHa | |
| 6 | HL_5D8H_002 | 5D8H | 0.1611 | 0 | GNRA wlth tandem sheared | A | LSU rRNA | C | 1202 | G | 1203 | U | 1204 | A | 1205 | A | 1206 | C | 1207 | A | 1208 | G | 1209 | cWW | tSH | |
| 7 | HL_6PRV_002 | 6PRV | 0.1614 | 0 | GNRA wlth tandem sheared | A | LSU rRNA | C | 1092 | G | 1093 | U | 1094 | A | 1095 | A | 1096 | U | 1097 | A | 1098 | G | 1099 | cWW | tSH | |
| 8 | HL_8B0X_052 | 8B0X | 0.0000 | 0 | GNRA wlth tandem sheared (H) | a | LSU rRNA | G | 714 | G | 715 | U | 716 | A | 717 | A | 718 | C | 719 | A | 720 | C | 721 | cWW | tSH | |
| 9 | HL_9DFE_020 | 9DFE | 0.2375 | 0 | GNRA wlth tandem sheared | 1A | LSU rRNA | G | 712 | G | 713 | U | 714 | G | 715 | A | 716 | G | 717 | A | 718 | C | 719 | cWW | ntSH | |
| 10 | HL_3HHN_010 | 3HHN | 0.2513 | 0 | GNRA wlth tandem sheared | E | Class I ligase ribozyme, self-ligation product | G | 92 | U | 93 | U | 94 | A | 95 | A | 96 | A | 97 | A | 98 | C | 99 | cWW | ntSH | |
| 11 | HL_8B0X_011 | 8B0X | 0.3959 | 1 | GNRA wlth extra near cWW (H) | A | SSU rRNA | G | 462 | U | 463 | U | 464 | A | 465 | A | 466 | A | 468 | C | 469 | C | 470 | cWW | ||
| 12 | HL_4V9F_043 | 4V9F | 0.3961 | 1 | GNRA wlth tandem sheared | 0 | LSU rRNA | C | 1705 | G | 1706 | G | 1707 | C | 1708 | G | 1709 | A | 1711 | A | 1712 | G | 1713 | cWW | tSH | ntSH |
| 13 | HL_8GLP_109 | 8GLP | 0.3242 | 2 | Anticodon loop related (H) | S2 | SSU rRNA | A | 1295 | U | 1296 | U | 1297 | G | 1298 | A | 1299 | A | 1301 | C | 1303 | U | 1304 | cWW | tsS | |
| 14 | HL_8CRE_217 | 8CRE | 0.3498 | 2 | GNRA wlth extra near cWW | CM | SSU rRNA | A | 1223 | U | 1224 | U | 1225 | G | 1226 | A | 1227 | A | 1229 | C | 1231 | U | 1232 | cWW | ntsS | |
| 15 | HL_8P9A_216 | 8P9A | 0.4033 | 2 | GNRA wlth extra near cWW | sR | SSU rRNA | A | 1238 | U | 1239 | U | 1240 | G | 1241 | A | 1242 | A | 1244 | C | 1246 | U | 1247 | cWW | ntsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUAACAG | 2 |
| AUUGAGAGCU | 2 |
| CUCGAACAG | 1 |
| GGUGGCUC | 1 |
| AGUUAUGU | 1 |
| UGUAACAA | 1 |
| CGUAAUAG | 1 |
| GGUAACAC | 1 |
| GGUGAGAC | 1 |
| GUUAAAAC | 1 |
| GUUAAUACC | 1 |
| CGGCGAAAG | 1 |
| AUUGAUAGCU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAACA | 4 |
| UUGAGAGC | 2 |
| UCGAACA | 1 |
| GUGGCU | 1 |
| GUUAUG | 1 |
| GUAAUA | 1 |
| GUGAGA | 1 |
| UUAAAA | 1 |
| UUAAUAC | 1 |
| GGCGAAA | 1 |
| UUGAUAGC | 1 |
Release history
| Release | 4.2 |
|---|---|
| Date | 2025-10-08 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- GNRA wlth tandem sheared (9)
- GNRA wlth extra near cWW (2)
- (1)
- GNRA wlth extra near cWW (H) (1)
- GNRA wlth tandem sheared (H) (1)
- Anticodon loop related (H) (1)
- Basepair signature
- cWW-tSH-F-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.34 | Max 0.63
Coloring options: