HL_4V4Z_121

3D structure

PDB id

4V4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Thermus thermophilous ribosome functional complex with mRNA and E- and P-site tRNAs at 4.5A.

Experimental method

X-RAY DIFFRACTION

Resolution

4.51 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V4Z_121 not in the Motif Atlas

Homologous match to HL_9DFE_026

Geometric discrepancy: 0.3635

The information below is about HL_9DFE_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V4Z|1|BA|G|978
4V4Z|1|BA|G|979
4V4Z|1|BA|A|980
4V4Z|1|BA|A|981
4V4Z|1|BA|C|982
4V4Z|1|BA|A|983
4V4Z|1|BA|A|984
4V4Z|1|BA|C|985

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

50S RIBOSOMAL PROTEIN L30

Chain BU

50S RIBOSOMAL PROTEIN L21