HL_4V50_006

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

4V50|1|AA|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V50_006 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.1227

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

4V50|1|AA|G|259
4V50|1|AA|G|260
4V50|1|AA|U|261
4V50|1|AA|A|262
4V50|1|AA|A|263
4V50|1|AA|C|264
4V50|1|AA|G|265
4V50|1|AA|G|266
4V50|1|AA|C|267

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AQ

30S ribosomal protein S17

Chain AT

30S ribosomal protein S20