HL_4V50_061

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

4V50|1|BB|U|958, 4V50|1|BB|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V50_061 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1103

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V50|1|BB|U|955
4V50|1|BB|G|956
4V50|1|BB|C|957
4V50|1|BB|U|958
4V50|1|BB|A|959
4V50|1|BB|A|960
4V50|1|BB|C|961
4V50|1|BB|G|962

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BM

50S ribosomal protein L16