HL_4V50_091

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V50_091 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1151

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

4V50|1|BB|U|2324
4V50|1|BB|G|2325
4V50|1|BB|C|2326
4V50|1|BB|A|2327
4V50|1|BB|A|2328
4V50|1|BB|U|2329
4V50|1|BB|G|2330
4V50|1|BB|G|2331

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L5

Chain BM

50S ribosomal protein L16

Chain BW

50S ribosomal protein L27