HL_4V50_101

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V50|1|BB|G|2751, 4V50|1|BB|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V50_101 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1085

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4V50|1|BB|C|2745
4V50|1|BB|U|2746
4V50|1|BB|G|2747
4V50|1|BB|A|2748
4V50|1|BB|A|2749
4V50|1|BB|A|2750
4V50|1|BB|G|2751
4V50|1|BB|C|2752
4V50|1|BB|A|2753
4V50|1|BB|U|2754
4V50|1|BB|C|2755
4V50|1|BB|U|2756
4V50|1|BB|A|2757
4V50|1|BB|A|2758
4V50|1|BB|G|2759

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BG

50S ribosomal protein L6

Chain BJ

50S ribosomal protein L13