HL_4V50_140

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V50_140 not in the Motif Atlas

Homologous match to HL_7RQB_001

Geometric discrepancy: 0.4378

The information below is about HL_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_99167.2

Basepair signature

cWW-F-F-cSH-F-F

Number of instances in this motif group

6

Unit IDs

4V50|1|DB|U|59
4V50|1|DB|G|60
4V50|1|DB|C|61
4V50|1|DB|U|62
4V50|1|DB|A|63
4V50|1|DB|A|64
4V50|1|DB|U|65
4V50|1|DB|C|66
4V50|1|DB|U|67
4V50|1|DB|G|68

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain DT

50S ribosomal protein L23

Chain DY

50S ribosomal protein L29