HL_4V50_143

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

4V50|1|DB|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V50_143 not in the Motif Atlas

Geometric match to HL_2NUE_001

Geometric discrepancy: 0.3532

The information below is about HL_2NUE_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4V50|1|DB|U|137
4V50|1|DB|U|138
4V50|1|DB|U|139
4V50|1|DB|C|140
4V50|1|DB|G|141
4V50|1|DB|A|142

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain DT

50S ribosomal protein L23