HL_4V50_162

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

4V50|1|DB|A|781, 4V50|1|DB|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V50_162 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1332

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

4V50|1|DB|U|779
4V50|1|DB|G|780
4V50|1|DB|A|781
4V50|1|DB|A|782
4V50|1|DB|A|783
4V50|1|DB|G|784
4V50|1|DB|G|785

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain DC

50S ribosomal protein L2