HL_4V50_187

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

4V50|1|DB|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V50_187 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.2313

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

4V50|1|DB|G|1910
4V50|1|DB|U|1911
4V50|1|DB|A|1912
4V50|1|DB|A|1913
4V50|1|DB|C|1914
4V50|1|DB|U|1915
4V50|1|DB|A|1916
4V50|1|DB|U|1917
4V50|1|DB|A|1918
4V50|1|DB|A|1919
4V50|1|DB|C|1920

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA