HL_9DFE_046

3D structure

PDB id

9DFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

G(PSU)AAC(5MU)A(PSU)AA(OMC)

Length

11 nucleotides

Bulged bases

9DFE|1|1A|A|1913

QA status

Modified nucleotides: PSU, 5MU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

9DFE|1|1A|G|1910
9DFE|1|1A|PSU|1911
9DFE|1|1A|A|1912
9DFE|1|1A|A|1913
9DFE|1|1A|C|1914
9DFE|1|1A|5MU|1915
9DFE|1|1A|A|1916
9DFE|1|1A|PSU|1917
9DFE|1|1A|A|1918
9DFE|1|1A|A|1919
9DFE|1|1A|OMC|1920

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1a

Small subunit ribosomal RNA; SSU rRNA

Chain 1y

Ribosome-associated inhibitor A