HL_4V50_189

3D structure

PDB id

4V50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Ribosome with messenger RNA and the Anticodon stem-loop of P-site tRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.22 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V50|1|DB|A|2030, 4V50|1|DB|A|2031, 4V50|1|DB|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V50_189 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.129

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

4V50|1|DB|G|2027
4V50|1|DB|U|2028
4V50|1|DB|G|2029
4V50|1|DB|A|2030
4V50|1|DB|A|2031
4V50|1|DB|G|2032
4V50|1|DB|A|2033
4V50|1|DB|U|2034
4V50|1|DB|G|2035
4V50|1|DB|C|2036

Current chains

Chain DB

23S ribosomal RNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DD

50S ribosomal protein L3

Chain DR

50S ribosomal protein L21