HL_4V51_229

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

GCGGGACGGAAAUCCGC

Length

17 nucleotides

Bulged bases

4V51|1|BA|G|2307, 4V51|1|BA|A|2310, 4V51|1|BA|A|2311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V51_229 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.388

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

4V51|1|BA|G|2300
4V51|1|BA|C|2301
4V51|1|BA|G|2302
4V51|1|BA|G|2303
4V51|1|BA|G|2304
4V51|1|BA|A|2305
4V51|1|BA|C|2306
4V51|1|BA|G|2307
4V51|1|BA|G|2308
4V51|1|BA|A|2309
4V51|1|BA|A|2310
4V51|1|BA|A|2311
4V51|1|BA|U|2312
4V51|1|BA|C|2313
4V51|1|BA|C|2314
4V51|1|BA|G|2315
4V51|1|BA|C|2316

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BG

50S RIBOSOMAL PROTEIN L5