HL_4V51_238

3D structure

PDB id

4V51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

UGGUUCGAUUCCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V51_238 not in the Motif Atlas

Homologous match to HL_5EL4_250

Geometric discrepancy: 0.3674

The information below is about HL_5EL4_250

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25222.2

Basepair signature

cWW-cWW-F-F-cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4V51|1|CW|U|51
4V51|1|CW|G|52
4V51|1|CW|G|53
4V51|1|CW|U|54
4V51|1|CW|U|55
4V51|1|CW|C|56
4V51|1|CW|G|57
4V51|1|CW|A|58
4V51|1|CW|U|59
4V51|1|CW|U|60
4V51|1|CW|C|61
4V51|1|CW|C|62
4V51|1|CW|G|63

Current chains

Chain CW

E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES)

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DC

50S RIBOSOMAL PROTEIN L1