Motif HL_25222.2 Version HL_25222.2 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 1-13 | 2-12 | 3-4 | 3-11 | 4-10 | 4-11 | 5-8 | 5-10 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4V7M_226 | 4V7M | 0.4974 | 0 | AY | tRNA | G | 28 | G | 29 | A | 30 | U | 31 | U | 32 | G | 33 | U | 34 | G | 35 | A | 36 | U | 37 | U | 38 | C | 39 | C | 40 | cWW | ncWW | ncWH | ncwW | ||||
| 2 | HL_7OSM_128 | 7OSM | 0.3848 | 0 | ASIT | tRNA | G | 29 | G | 30 | A | 31 | U | 32 | U | 33 | G | 34 | A | 35 | A | 36 | YG | 37 | A | 38 | U | 39 | C | 40 | C | 41 | cWW | ncWW | ncWW | |||||
| 3 | HL_8C3A_205 | 8C3A | 0.0000 | 0 | CM | SSU rRNA | A | 518 | A | 519 | U | 520 | G | 521 | U | 522 | A | 523 | A | 524 | A | 525 | U | 526 | A | 527 | C | 528 | C | 529 | U | 530 | cWW | ncWWa | tSH | |||||
| 4 | HL_4V88_199 | 4V88 | 0.1157 | 0 | A6 | SSU rRNA | A | 520 | A | 521 | U | 522 | G | 523 | U | 524 | A | 525 | A | 526 | A | 527 | U | 528 | A | 529 | C | 530 | C | 531 | U | 532 | cWW | ncWWa | tSH | |||||
| 5 | HL_4WFL_001 | 4WFL | 0.2963 | 0 | A | LSRP RNA | G | 19 | A | 20 | G | 21 | G | 22 | U | 23 | A | 24 | G | 25 | C | 26 | G | 27 | G | 28 | U | 29 | G | 30 | C | 31 | cWW | cWW | tSH | ntSHa | ||||
| 6 | HL_7A0S_072 | 7A0S | 0.8135 | 2 | X | LSU rRNA | G | 1503 | G | 1504 | U | 1505 | A | 1507 | G | 1508 | A | 1509 | A | 1510 | A | 1511 | A | 1512 | C | 1514 | U | 1515 | A | 1516 | C | 1517 | cWW | cWW | ncWH | ncWW | ncWW | |||
| 7 | HL_5E81_248 | 5E81 | 0.9005 | 0 | 3L | tRNA | A | 51 | G | 52 | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | A | 59 | U | 60 | C | 61 | C | 62 | U | 63 | ncWW | ncWW | ||||||
| 8 | HL_5EL4_250 | 5EL4 | 0.8271 | 0 | 3L | tRNA | A | 51 | G | 52 | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | A | 59 | U | 60 | C | 61 | C | 62 | U | 63 | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AAUGUAAAUACCU | 2 |
| AGGUUCGAAUCCU | 2 |
| GGAUUGUGAUUCC | 1 |
| GGAUUGAA(YG)AUCC | 1 |
| GAGGUAGCGGUGC | 1 |
| GGUCAGAAAAUCUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGUAAAUACC | 2 |
| GGUUCGAAUCC | 2 |
| GAUUGUGAUUC | 1 |
| GAUUGAA(YG)AUC | 1 |
| AGGUAGCGGUG | 1 |
| GUCAGAAAAUCUA | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (8)
- Basepair signature
- cWW-cWW-F-F-cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.12 | Avg 0.59 | Max 0.95
Coloring options: