HL_4V52_018

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

4V52|1|AA|C|841, 4V52|1|AA|U|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V52_018 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3801

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4V52|1|AA|C|840
4V52|1|AA|C|841
4V52|1|AA|U|842
4V52|1|AA|U|843
4V52|1|AA|G|844
4V52|1|AA|A|845
4V52|1|AA|G|846

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AR

30S ribosomal protein S18

Chain CB

30S ribosomal protein S2