HL_4V52_146

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

4V52|1|DB|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V52_146 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1121

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

4V52|1|DB|C|305
4V52|1|DB|U|306
4V52|1|DB|G|307
4V52|1|DB|G|308
4V52|1|DB|A|309
4V52|1|DB|A|310
4V52|1|DB|A|311
4V52|1|DB|G|312

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DU

50S ribosomal protein L24