HL_4V52_182
3D structure
- PDB id
- 4V52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.21 Å
Loop
- Sequence
- UUUAUUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 4V52|1|DB|A|1780, 4V52|1|DB|U|1781, 4V52|1|DB|U|1782, 4V52|1|DB|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V52_182 not in the Motif Atlas
- Homologous match to HL_5J7L_178
- Geometric discrepancy: 0.0988
- The information below is about HL_5J7L_178
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01962.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
4V52|1|DB|U|1777
4V52|1|DB|U|1778
4V52|1|DB|U|1779
4V52|1|DB|A|1780
4V52|1|DB|U|1781
4V52|1|DB|U|1782
4V52|1|DB|A|1783
4V52|1|DB|A|1784
4V52|1|DB|A|1785
4V52|1|DB|A|1786
4V52|1|DB|A|1787
Current chains
- Chain DB
- 23S rRNA
Nearby chains
- Chain D2
- 50S ribosomal protein L34
- Chain DC
- 50S ribosomal protein L2
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