HL_4V52_189

3D structure

PDB id

4V52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with neomycin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.21 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

4V52|1|DB|A|2211, 4V52|1|DB|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V52_189 not in the Motif Atlas

Homologous match to HL_4WF9_048

Geometric discrepancy: 0.2912

The information below is about HL_4WF9_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

4V52|1|DB|G|2209
4V52|1|DB|U|2210
4V52|1|DB|A|2211
4V52|1|DB|A|2212
4V52|1|DB|U|2213
4V52|1|DB|C|2214
4V52|1|DB|C|2215

Current chains

Chain DB

23S rRNA

Nearby chains