HL_4V53_021

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

4V53|1|AA|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_021 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.1296

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V53|1|AA|G|963
4V53|1|AA|A|964
4V53|1|AA|U|965
4V53|1|AA|G|966
4V53|1|AA|C|967
4V53|1|AA|A|968
4V53|1|AA|A|969
4V53|1|AA|C|970
4V53|1|AA|G|971
4V53|1|AA|C|972

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AI

30S ribosomal protein S9

Chain AJ

30S ribosomal protein S10

Chain AM

30S ribosomal protein S13