HL_4V53_038

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

4V53|1|BB|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_038 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3275

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V53|1|BB|U|137
4V53|1|BB|U|138
4V53|1|BB|U|139
4V53|1|BB|C|140
4V53|1|BB|G|141
4V53|1|BB|A|142

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BT

50S ribosomal protein L23