3D structure

PDB id
4V53 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.54 Å

Loop

Sequence
GUGACAGCC
Length
9 nucleotides
Bulged bases
4V53|1|BB|G|329
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V53_045 not in the Motif Atlas
Homologous match to HL_5J7L_144
Geometric discrepancy: 0.1167
The information below is about HL_5J7L_144
Detailed Annotation
T-loop with unstacked turn
Broad Annotation
T-loop
Motif group
HL_27670.2
Basepair signature
cWW-tWH-F-F
Number of instances in this motif group
13

Unit IDs

4V53|1|BB|G|327
4V53|1|BB|U|328
4V53|1|BB|G|329
4V53|1|BB|A|330
4V53|1|BB|C|331
4V53|1|BB|A|332
4V53|1|BB|G|333
4V53|1|BB|C|334
4V53|1|BB|C|335

Current chains

Chain BB
23S rRNA

Nearby chains

Chain BE
50S ribosomal protein L4
Chain BU
50S ribosomal protein L24

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2981 s