HL_4V53_060

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

4V53|1|BB|U|958, 4V53|1|BB|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_060 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1387

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V53|1|BB|U|955
4V53|1|BB|G|956
4V53|1|BB|C|957
4V53|1|BB|U|958
4V53|1|BB|A|959
4V53|1|BB|A|960
4V53|1|BB|C|961
4V53|1|BB|G|962

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BM

50S ribosomal protein L16