HL_4V53_084
3D structure
- PDB id
- 4V53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 4V53|1|BB|A|2030, 4V53|1|BB|A|2031, 4V53|1|BB|G|2032
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V53_084 not in the Motif Atlas
- Homologous match to HL_4WF9_047
- Geometric discrepancy: 0.1165
- The information below is about HL_4WF9_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_61996.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4V53|1|BB|G|2027
4V53|1|BB|U|2028
4V53|1|BB|G|2029
4V53|1|BB|A|2030
4V53|1|BB|A|2031
4V53|1|BB|G|2032
4V53|1|BB|A|2033
4V53|1|BB|U|2034
4V53|1|BB|G|2035
4V53|1|BB|C|2036
Current chains
- Chain BB
- 23S rRNA
Nearby chains
- Chain B0
- 50S ribosomal protein L32
- Chain BD
- 50S ribosomal protein L3
- Chain BR
- 50S ribosomal protein L21
Coloring options: