HL_4V53_090

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_090 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1312

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

4V53|1|BB|U|2324
4V53|1|BB|G|2325
4V53|1|BB|C|2326
4V53|1|BB|A|2327
4V53|1|BB|A|2328
4V53|1|BB|U|2329
4V53|1|BB|G|2330
4V53|1|BB|G|2331

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BF

50S ribosomal protein L5

Chain BW

50S ribosomal protein L27