HL_4V53_121

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CCUUGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_121 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.38

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V53|1|CA|C|840
4V53|1|CA|C|841
4V53|1|CA|U|842
4V53|1|CA|U|843
4V53|1|CA|G|844
4V53|1|CA|A|845
4V53|1|CA|G|846

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CR

30S ribosomal protein S18