HL_4V53_126

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

4V53|1|CA|U|1030

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_126 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3618

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V53|1|CA|C|1028
4V53|1|CA|U|1029
4V53|1|CA|U|1030
4V53|1|CA|C|1031
4V53|1|CA|G|1032
4V53|1|CA|G|1033

Current chains

Chain CA

16S rRNA

Nearby chains

Chain BB

Large subunit ribosomal RNA; LSU rRNA