HL_4V53_137

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GUCUC

Length

5 nucleotides

Bulged bases

4V53|1|DA|C|88, 4V53|1|DA|U|89

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_137 not in the Motif Atlas

Homologous match to HL_5J7L_204

Geometric discrepancy: 0.5954

The information below is about HL_5J7L_204

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

4V53|1|DA|G|86
4V53|1|DA|U|87
4V53|1|DA|C|88
4V53|1|DA|U|89
4V53|1|DA|C|90

Current chains

Chain DA

5S rRNA

Nearby chains

Chain DB

Large subunit ribosomal RNA; LSU rRNA

Chain DM

50S ribosomal protein L16