HL_4V53_138
3D structure
- PDB id
- 4V53 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.54 Å
Loop
- Sequence
- UGCUAAUCUG
- Length
- 10 nucleotides
- Bulged bases
- 4V53|1|DB|C|61
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V53_138 not in the Motif Atlas
- Homologous match to HL_7RQB_001
- Geometric discrepancy: 0.3386
- The information below is about HL_7RQB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99167.2
- Basepair signature
- cWW-F-F-cSH-F-F
- Number of instances in this motif group
- 6
Unit IDs
4V53|1|DB|U|59
4V53|1|DB|G|60
4V53|1|DB|C|61
4V53|1|DB|U|62
4V53|1|DB|A|63
4V53|1|DB|A|64
4V53|1|DB|U|65
4V53|1|DB|C|66
4V53|1|DB|U|67
4V53|1|DB|G|68
Current chains
- Chain DB
- 23S rRNA
Nearby chains
- Chain DT
- 50S ribosomal protein L23
- Chain DX
- 50S ribosomal protein L29
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