HL_4V53_153

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

4V53|1|DB|U|546, 4V53|1|DB|G|549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_153 not in the Motif Atlas

Homologous match to HL_8VTW_016

Geometric discrepancy: 0.584

The information below is about HL_8VTW_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76539.6

Basepair signature

cWW-F

Number of instances in this motif group

20

Unit IDs

4V53|1|DB|G|543
4V53|1|DB|C|544
4V53|1|DB|U|545
4V53|1|DB|U|546
4V53|1|DB|A|547
4V53|1|DB|G|548
4V53|1|DB|G|549
4V53|1|DB|C|550

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DJ

50S ribosomal protein L13

Chain DQ

50S ribosomal protein L20

Chain DR

50S ribosomal protein L21