#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 31-3
1 HL_8C3A_1948C3A0.00004GNRA relatedCM SSU rRNAG152U153C158cWW
2 HL_4V88_1884V880.17004GNRA relatedA6 SSU rRNAG154U155C160cWW
3 HL_4ZNP_0014ZNP0.42303AZMP/ZTP riboswitchG26G27C31cWW
4 HL_4V9F_0464V9F0.330620 LSU rRNAC1808G1809G1812cWW
5 HL_8VTW_0438VTW0.352021A LSU rRNAC1752G1753G1756cWW
6 HL_5J7L_1775J7L0.30812DA LSU rRNAC1752G1753G1756cWW
7 HL_4WF9_0424WF90.32542X LSU rRNAC1779G1780G1783cWW
8 HL_9BUN_0019BUN0.39333ARNA (48-MER)G7G8C12cWW
9 HL_7A0S_0447A0S0.40462X LSU rRNAC1743G1744G1747cWW
10 HL_7Z4D_0017Z4D0.40823A tracrRNAA32G33U37cWW
11 HL_7QQX_0017QQX0.34863GNRAA tracrRNAA32G33U37cWW
12 HL_4QK9_0014QK90.36263GNRA variationA cyclic di-AMP riboswitchC14U15G19cWW
13 HL_1U6B_0041U6B0.40543GNRA variationB197-MERC153A154G158cWW
14 HL_8VTW_0168VTW0.352411A LSU rRNAC543G545G549cWW
15 HL_7U4A_0017U4A0.49233GNRA variationARNA (70-MER)C13G14G18cWW
16 HL_3IVK_0023IVK0.40362Mclass I ligase productC40G41G44cWW
17 HL_3HHN_0073HHN0.46752EClass I ligase ribozyme, self-ligation productC40G41G44cWW
18 HL_5MGA_0015MGA0.78773BRNA (40-MER)C-11U-10G-6cWW
19 HL_5NFV_0015NFV0.23463Bpre-crRNAC-10U-9G-5cWW
20 HL_5XH7_0015XH70.83943BcrRNAC-11U-10G-6cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGCAG4
CGAAG3
GUAAUUC2
GGAAAC2
AGAAAU2
CUGUUG2
CUGAAG1
CAAACG1
CGAG1
CGAAAG1
CUCUUG1
Non-Watson-Crick part of the motif
SequenceCounts
GAAA5
GCA4
GAA3
UAAUU2
UGUU2
UGAA1
AAAC1
GA1
UCUU1

Release history

Release3.87
Date2024-08-14
StatusUpdated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (14)
  • GNRA variation (3)
  • GNRA related (2)
  • GNRA (1)
  • Basepair signature
    cWW-F
    Heat map statistics
    Min 0.09 | Avg 0.35 | Max 0.99
    Help

    Coloring options:

    Copyright 2026 BGSU RNA group. Page generated in 0.6937 s