HL_4V53_156

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_156 not in the Motif Atlas

Homologous match to HL_5J7L_152

Geometric discrepancy: 0.0942

The information below is about HL_5J7L_152

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V53|1|DB|G|629
4V53|1|DB|G|630
4V53|1|DB|A|631
4V53|1|DB|A|632
4V53|1|DB|A|633
4V53|1|DB|C|634

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L35

Chain DL

50S ribosomal protein L15