HL_4V53_184

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

4V53|1|DB|C|1870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_184 not in the Motif Atlas

Homologous match to HL_5J7L_180

Geometric discrepancy: 0.4793

The information below is about HL_5J7L_180

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

4V53|1|DB|C|1868
4V53|1|DB|G|1869
4V53|1|DB|C|1870
4V53|1|DB|A|1871
4V53|1|DB|A|1872
4V53|1|DB|G|1873

Current chains

Chain DB

23S rRNA

Nearby chains