HL_4V53_196

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

4V53|1|DB|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_196 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.1248

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V53|1|DB|U|2404
4V53|1|DB|G|2405
4V53|1|DB|A|2406
4V53|1|DB|A|2407
4V53|1|DB|U|2408
4V53|1|DB|G|2409
4V53|1|DB|G|2410
4V53|1|DB|A|2411
4V53|1|DB|A|2412
4V53|1|DB|G|2413

Current chains

Chain DB

23S rRNA

Nearby chains

Chain DL

50S ribosomal protein L15