3D structure

PDB id
4V53 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.
Experimental method
X-RAY DIFFRACTION
Resolution
3.54 Å

Loop

Sequence
CUGUUCG
Length
7 nucleotides
Bulged bases (A, C, G, U)
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V53_199 not in the Motif Atlas
Homologous match to HL_4WF9_058
Geometric discrepancy: 0.1495
The information below is about HL_4WF9_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_22584.1
Basepair signature
cWW-tSW-F
Number of instances in this motif group
22

Unit IDs

4V53|1|DB|C|2551
4V53|1|DB|U|2552
4V53|1|DB|G|2553
4V53|1|DB|U|2554
4V53|1|DB|U|2555
4V53|1|DB|C|2556
4V53|1|DB|G|2557

Current chains

Chain DB
23S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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