HL_4V53_203

3D structure

PDB id

4V53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with gentamicin.

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

4V53|1|DB|G|2751, 4V53|1|DB|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V53_203 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1091

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

4V53|1|DB|C|2745
4V53|1|DB|U|2746
4V53|1|DB|G|2747
4V53|1|DB|A|2748
4V53|1|DB|A|2749
4V53|1|DB|A|2750
4V53|1|DB|G|2751
4V53|1|DB|C|2752
4V53|1|DB|A|2753
4V53|1|DB|U|2754
4V53|1|DB|C|2755
4V53|1|DB|U|2756
4V53|1|DB|A|2757
4V53|1|DB|A|2758
4V53|1|DB|G|2759

Current chains

Chain DB

23S rRNA

Nearby chains

Chain D4

50S ribosomal protein L36

Chain DG

50S ribosomal protein L6

Chain DJ

50S ribosomal protein L13