HL_4V54_035

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

4V54|1|BB|C|61

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V54_035 not in the Motif Atlas

Homologous match to HL_7RQB_001

Geometric discrepancy: 0.3536

The information below is about HL_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_99167.2

Basepair signature

cWW-F-F-cSH-F-F

Number of instances in this motif group

6

Unit IDs

4V54|1|BB|U|59
4V54|1|BB|G|60
4V54|1|BB|C|61
4V54|1|BB|U|62
4V54|1|BB|A|63
4V54|1|BB|A|64
4V54|1|BB|U|65
4V54|1|BB|C|66
4V54|1|BB|U|67
4V54|1|BB|G|68

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BT

50S ribosomal protein L23

Chain BX

50S ribosomal protein L29