HL_4V54_057

3D structure

PDB id

4V54 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome from Escherichia coli in complex with ribosome recycling factor (RRF).

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

4V54|1|BB|A|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V54_057 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.2061

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

4V54|1|BB|U|779
4V54|1|BB|G|780
4V54|1|BB|A|781
4V54|1|BB|A|782
4V54|1|BB|A|783
4V54|1|BB|G|784
4V54|1|BB|G|785

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2